<!DOCTYPE html>
<html lang="en">
<head>
    <meta http-equiv="content-type" content="text/html;charset=utf-8"/>
    <meta name="viewport" content="width=device-width, initial-scale=1.0"/>
    <meta name="description" content="This trains is a  Graph Attention Network v2 (GATv2) on Cora dataset"/>

    <meta name="twitter:card" content="summary"/>
    <meta name="twitter:image:src" content="https://avatars1.githubusercontent.com/u/64068543?s=400&amp;v=4"/>
    <meta name="twitter:title" content="Train a Graph Attention Network v2 (GATv2) on Cora dataset"/>
    <meta name="twitter:description" content="This trains is a  Graph Attention Network v2 (GATv2) on Cora dataset"/>
    <meta name="twitter:site" content="@labmlai"/>
    <meta name="twitter:creator" content="@labmlai"/>

    <meta property="og:url" content="https://nn.labml.ai/graphs/gatv2/experiment.html"/>
    <meta property="og:title" content="Train a Graph Attention Network v2 (GATv2) on Cora dataset"/>
    <meta property="og:image" content="https://avatars1.githubusercontent.com/u/64068543?s=400&amp;v=4"/>
    <meta property="og:site_name" content="Train a Graph Attention Network v2 (GATv2) on Cora dataset"/>
    <meta property="og:type" content="object"/>
    <meta property="og:title" content="Train a Graph Attention Network v2 (GATv2) on Cora dataset"/>
    <meta property="og:description" content="This trains is a  Graph Attention Network v2 (GATv2) on Cora dataset"/>

    <title>Train a Graph Attention Network v2 (GATv2) on Cora dataset</title>
    <link rel="shortcut icon" href="/icon.png"/>
    <link rel="stylesheet" href="../../pylit.css?v=1">
    <link rel="canonical" href="https://nn.labml.ai/graphs/gatv2/experiment.html"/>
    <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/katex@0.13.18/dist/katex.min.css" integrity="sha384-zTROYFVGOfTw7JV7KUu8udsvW2fx4lWOsCEDqhBreBwlHI4ioVRtmIvEThzJHGET" crossorigin="anonymous">

    <!-- Global site tag (gtag.js) - Google Analytics -->
    <script async src="https://www.googletagmanager.com/gtag/js?id=G-4V3HC8HBLH"></script>
    <script>
        window.dataLayer = window.dataLayer || [];

        function gtag() {
            dataLayer.push(arguments);
        }

        gtag('js', new Date());

        gtag('config', 'G-4V3HC8HBLH');
    </script>
</head>
<body>
<div id='container'>
    <div id="background"></div>
    <div class='section'>
        <div class='docs'>
            <p>
                <a class="parent" href="/">home</a>
                <a class="parent" href="../index.html">graphs</a>
                <a class="parent" href="index.html">gatv2</a>
            </p>
            <p>
                <a href="https://github.com/labmlai/annotated_deep_learning_paper_implementations" target="_blank">
                    <img alt="Github"
                         src="https://img.shields.io/github/stars/labmlai/annotated_deep_learning_paper_implementations?style=social"
                         style="max-width:100%;"/></a>
                <a href="https://twitter.com/labmlai" rel="nofollow" target="_blank">
                    <img alt="Twitter"
                         src="https://img.shields.io/twitter/follow/labmlai?style=social"
                         style="max-width:100%;"/></a>
            </p>
            <p>
                <a href="https://github.com/labmlai/annotated_deep_learning_paper_implementations/tree/master/labml_nn/graphs/gatv2/experiment.py" target="_blank">
                    View code on Github</a>
            </p>
        </div>
    </div>
    <div class='section' id='section-0'>
        <div class='docs doc-strings'>
            <div class='section-link'>
                <a href='#section-0'>#</a>
            </div>
            <h1>Train a Graph Attention Network v2 (GATv2) on Cora dataset</h1>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">11</span><span></span><span class="kn">import</span> <span class="nn">torch</span>
<span class="lineno">12</span><span class="kn">from</span> <span class="nn">torch</span> <span class="kn">import</span> <span class="n">nn</span>
<span class="lineno">13</span>
<span class="lineno">14</span><span class="kn">from</span> <span class="nn">labml</span> <span class="kn">import</span> <span class="n">experiment</span>
<span class="lineno">15</span><span class="kn">from</span> <span class="nn">labml.configs</span> <span class="kn">import</span> <span class="n">option</span>
<span class="lineno">16</span><span class="kn">from</span> <span class="nn">labml_nn.graphs.gat.experiment</span> <span class="kn">import</span> <span class="n">Configs</span> <span class="k">as</span> <span class="n">GATConfigs</span>
<span class="lineno">17</span><span class="kn">from</span> <span class="nn">labml_nn.graphs.gatv2</span> <span class="kn">import</span> <span class="n">GraphAttentionV2Layer</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-1'>
        <div class='docs doc-strings'>
            <div class='section-link'>
                <a href='#section-1'>#</a>
            </div>
            <h2>Graph Attention Network v2 (GATv2)</h2>
<p>This graph attention network has two <a href="index.html">graph attention layers</a>.</p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">20</span><span class="k">class</span> <span class="nc">GATv2</span><span class="p">(</span><span class="n">nn</span><span class="o">.</span><span class="n">Module</span><span class="p">):</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-2'>
        <div class='docs doc-strings'>
            <div class='section-link'>
                <a href='#section-2'>#</a>
            </div>
            <ul><li><code  class="highlight"><span></span><span class="n">in_features</span></code>
 is the number of features per node </li>
<li><code  class="highlight"><span></span><span class="n">n_hidden</span></code>
 is the number of features in the first graph attention layer </li>
<li><code  class="highlight"><span></span><span class="n">n_classes</span></code>
 is the number of classes </li>
<li><code  class="highlight"><span></span><span class="n">n_heads</span></code>
 is the number of heads in the graph attention layers </li>
<li><code  class="highlight"><span></span><span class="n">dropout</span></code>
 is the dropout probability </li>
<li><code  class="highlight"><span></span><span class="n">share_weights</span></code>
 if set to True, the same matrix will be applied to the source and the target node of every edge</li></ul>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">27</span>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">in_features</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">n_hidden</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">n_classes</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">n_heads</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">dropout</span><span class="p">:</span> <span class="nb">float</span><span class="p">,</span>
<span class="lineno">28</span>                 <span class="n">share_weights</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">):</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-3'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-3'>#</a>
            </div>
            
        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">37</span>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">()</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-4'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-4'>#</a>
            </div>
            <p>First graph attention layer where we concatenate the heads </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">40</span>        <span class="bp">self</span><span class="o">.</span><span class="n">layer1</span> <span class="o">=</span> <span class="n">GraphAttentionV2Layer</span><span class="p">(</span><span class="n">in_features</span><span class="p">,</span> <span class="n">n_hidden</span><span class="p">,</span> <span class="n">n_heads</span><span class="p">,</span>
<span class="lineno">41</span>                                            <span class="n">is_concat</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">dropout</span><span class="o">=</span><span class="n">dropout</span><span class="p">,</span> <span class="n">share_weights</span><span class="o">=</span><span class="n">share_weights</span><span class="p">)</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-5'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-5'>#</a>
            </div>
            <p>Activation function after first graph attention layer </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">43</span>        <span class="bp">self</span><span class="o">.</span><span class="n">activation</span> <span class="o">=</span> <span class="n">nn</span><span class="o">.</span><span class="n">ELU</span><span class="p">()</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-6'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-6'>#</a>
            </div>
            <p>Final graph attention layer where we average the heads </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">45</span>        <span class="bp">self</span><span class="o">.</span><span class="n">output</span> <span class="o">=</span> <span class="n">GraphAttentionV2Layer</span><span class="p">(</span><span class="n">n_hidden</span><span class="p">,</span> <span class="n">n_classes</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span>
<span class="lineno">46</span>                                            <span class="n">is_concat</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">dropout</span><span class="o">=</span><span class="n">dropout</span><span class="p">,</span> <span class="n">share_weights</span><span class="o">=</span><span class="n">share_weights</span><span class="p">)</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-7'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-7'>#</a>
            </div>
            <p>Dropout </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">48</span>        <span class="bp">self</span><span class="o">.</span><span class="n">dropout</span> <span class="o">=</span> <span class="n">nn</span><span class="o">.</span><span class="n">Dropout</span><span class="p">(</span><span class="n">dropout</span><span class="p">)</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-8'>
        <div class='docs doc-strings'>
            <div class='section-link'>
                <a href='#section-8'>#</a>
            </div>
            <ul><li><code  class="highlight"><span></span><span class="n">x</span></code>
 is the features vectors of shape <code  class="highlight"><span></span><span class="p">[</span><span class="n">n_nodes</span><span class="p">,</span> <span class="n">in_features</span><span class="p">]</span></code>
 </li>
<li><code  class="highlight"><span></span><span class="n">adj_mat</span></code>
 is the adjacency matrix of the form  <code  class="highlight"><span></span><span class="p">[</span><span class="n">n_nodes</span><span class="p">,</span> <span class="n">n_nodes</span><span class="p">,</span> <span class="n">n_heads</span><span class="p">]</span></code>
 or <code  class="highlight"><span></span><span class="p">[</span><span class="n">n_nodes</span><span class="p">,</span> <span class="n">n_nodes</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span></code>
</li></ul>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">50</span>    <span class="k">def</span> <span class="nf">forward</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">:</span> <span class="n">torch</span><span class="o">.</span><span class="n">Tensor</span><span class="p">,</span> <span class="n">adj_mat</span><span class="p">:</span> <span class="n">torch</span><span class="o">.</span><span class="n">Tensor</span><span class="p">):</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-9'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-9'>#</a>
            </div>
            <p>Apply dropout to the input </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">57</span>        <span class="n">x</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">dropout</span><span class="p">(</span><span class="n">x</span><span class="p">)</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-10'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-10'>#</a>
            </div>
            <p>First graph attention layer </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">59</span>        <span class="n">x</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">layer1</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">adj_mat</span><span class="p">)</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-11'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-11'>#</a>
            </div>
            <p>Activation function </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">61</span>        <span class="n">x</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">activation</span><span class="p">(</span><span class="n">x</span><span class="p">)</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-12'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-12'>#</a>
            </div>
            <p>Dropout </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">63</span>        <span class="n">x</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">dropout</span><span class="p">(</span><span class="n">x</span><span class="p">)</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-13'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-13'>#</a>
            </div>
            <p>Output layer (without activation) for logits </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">65</span>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">output</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">adj_mat</span><span class="p">)</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-14'>
        <div class='docs doc-strings'>
            <div class='section-link'>
                <a href='#section-14'>#</a>
            </div>
            <h2>Configurations</h2>
<p>Since the experiment is same as <a href="../gat/experiment.html">GAT experiment</a> but with <a href="index.html">GATv2 model</a> we extend the same configs and change the model.</p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">68</span><span class="k">class</span> <span class="nc">Configs</span><span class="p">(</span><span class="n">GATConfigs</span><span class="p">):</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-15'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-15'>#</a>
            </div>
            <p>Whether to share weights for source and target nodes of edges </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">77</span>    <span class="n">share_weights</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-16'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-16'>#</a>
            </div>
            <p>Set the model </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">79</span>    <span class="n">model</span><span class="p">:</span> <span class="n">GATv2</span> <span class="o">=</span> <span class="s1">&#39;gat_v2_model&#39;</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-17'>
        <div class='docs doc-strings'>
            <div class='section-link'>
                <a href='#section-17'>#</a>
            </div>
            <p> Create GATv2 model</p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">82</span><span class="nd">@option</span><span class="p">(</span><span class="n">Configs</span><span class="o">.</span><span class="n">model</span><span class="p">)</span>
<span class="lineno">83</span><span class="k">def</span> <span class="nf">gat_v2_model</span><span class="p">(</span><span class="n">c</span><span class="p">:</span> <span class="n">Configs</span><span class="p">):</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-18'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-18'>#</a>
            </div>
            
        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">87</span>    <span class="k">return</span> <span class="n">GATv2</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">in_features</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">n_hidden</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">n_classes</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">n_heads</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">dropout</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">share_weights</span><span class="p">)</span><span class="o">.</span><span class="n">to</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">device</span><span class="p">)</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-19'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-19'>#</a>
            </div>
            
        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">90</span><span class="k">def</span> <span class="nf">main</span><span class="p">():</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-20'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-20'>#</a>
            </div>
            <p>Create configurations </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">92</span>    <span class="n">conf</span> <span class="o">=</span> <span class="n">Configs</span><span class="p">()</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-21'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-21'>#</a>
            </div>
            <p>Create an experiment </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">94</span>    <span class="n">experiment</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;gatv2&#39;</span><span class="p">)</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-22'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-22'>#</a>
            </div>
            <p>Calculate configurations. </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">96</span>    <span class="n">experiment</span><span class="o">.</span><span class="n">configs</span><span class="p">(</span><span class="n">conf</span><span class="p">,</span> <span class="p">{</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-23'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-23'>#</a>
            </div>
            <p>Adam optimizer </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">98</span>        <span class="s1">&#39;optimizer.optimizer&#39;</span><span class="p">:</span> <span class="s1">&#39;Adam&#39;</span><span class="p">,</span>
<span class="lineno">99</span>        <span class="s1">&#39;optimizer.learning_rate&#39;</span><span class="p">:</span> <span class="mf">5e-3</span><span class="p">,</span>
<span class="lineno">100</span>        <span class="s1">&#39;optimizer.weight_decay&#39;</span><span class="p">:</span> <span class="mf">5e-4</span><span class="p">,</span>
<span class="lineno">101</span>
<span class="lineno">102</span>        <span class="s1">&#39;dropout&#39;</span><span class="p">:</span> <span class="mf">0.7</span><span class="p">,</span>
<span class="lineno">103</span>    <span class="p">})</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-24'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-24'>#</a>
            </div>
            <p>Start and watch the experiment </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">106</span>    <span class="k">with</span> <span class="n">experiment</span><span class="o">.</span><span class="n">start</span><span class="p">():</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-25'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-25'>#</a>
            </div>
            <p>Run the training </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">108</span>        <span class="n">conf</span><span class="o">.</span><span class="n">run</span><span class="p">()</span></pre></div>
        </div>
    </div>
    <div class='section' id='section-26'>
        <div class='docs'>
            <div class='section-link'>
                <a href='#section-26'>#</a>
            </div>
            <p> </p>

        </div>
        <div class='code'>
            <div class="highlight"><pre><span class="lineno">112</span><span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s1">&#39;__main__&#39;</span><span class="p">:</span>
<span class="lineno">113</span>    <span class="n">main</span><span class="p">()</span></pre></div>
        </div>
    </div>
    <div class='footer'>
        <a href="https://labml.ai">labml.ai</a>
    </div>
</div>
<script src=../../interactive.js?v=1"></script>
<script>
    function handleImages() {
        var images = document.querySelectorAll('p>img')

        for (var i = 0; i < images.length; ++i) {
            handleImage(images[i])
        }
    }

    function handleImage(img) {
        img.parentElement.style.textAlign = 'center'

        var modal = document.createElement('div')
        modal.id = 'modal'

        var modalContent = document.createElement('div')
        modal.appendChild(modalContent)

        var modalImage = document.createElement('img')
        modalContent.appendChild(modalImage)

        var span = document.createElement('span')
        span.classList.add('close')
        span.textContent = 'x'
        modal.appendChild(span)

        img.onclick = function () {
            console.log('clicked')
            document.body.appendChild(modal)
            modalImage.src = img.src
        }

        span.onclick = function () {
            document.body.removeChild(modal)
        }
    }

    handleImages()
</script>
</body>
</html>